Commit eff52844 authored by Michael Menzel's avatar Michael Menzel

copyright and readme

parent 42cdafeb
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# Enhort: Genomic Position Profiling
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......@@ -89,3 +89,12 @@
.inputfile:focus + label, .inputfile + label:hover {
background-color: rgba(76, 167, 255, 0.21);
}
#gpl{
color: gray;
font-size: 8pt;
position: absolute;
bottom: 0;
text-align: right;
width: 99%;
}
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="CompilerConfiguration">
<annotationProcessing>
<profile name="Maven default annotation processors profile" enabled="true">
<sourceOutputDir name="target/generated-sources/annotations" />
<sourceTestOutputDir name="target/generated-test-sources/test-annotations" />
<outputRelativeToContentRoot value="true" />
<module name="iotest" />
</profile>
</annotationProcessing>
<bytecodeTargetLevel>
<module name="iotest" target="1.8" />
</bytecodeTargetLevel>
</component>
</project>
\ No newline at end of file
<component name="libraryTable">
<library name="Maven: edu.unc.genomics.io:genomics-io:1.0">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/edu/unc/genomics/io/genomics-io/1.0/genomics-io-1.0.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/edu/unc/genomics/io/genomics-io/1.0/genomics-io-1.0-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/edu/unc/genomics/io/genomics-io/1.0/genomics-io-1.0-sources.jar!/" />
</SOURCES>
</library>
</component>
\ No newline at end of file
<component name="libraryTable">
<library name="Maven: log4j:log4j:1.2.17">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/log4j/log4j/1.2.17/log4j-1.2.17.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/log4j/log4j/1.2.17/log4j-1.2.17-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/log4j/log4j/1.2.17/log4j-1.2.17-sources.jar!/" />
</SOURCES>
</library>
</component>
\ No newline at end of file
<component name="libraryTable">
<library name="Maven: org.slf4j:slf4j-api:1.7.25">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25-sources.jar!/" />
</SOURCES>
</library>
</component>
\ No newline at end of file
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="MavenProjectsManager">
<option name="originalFiles">
<list>
<option value="$PROJECT_DIR$/pom.xml" />
</list>
</option>
</component>
<component name="ProjectRootManager" version="2" languageLevel="JDK_1_3" project-jdk-name="1.8" project-jdk-type="JavaSDK">
<output url="file://$PROJECT_DIR$/out" />
</component>
</project>
\ No newline at end of file
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="ProjectModuleManager">
<modules>
<module fileurl="file://$PROJECT_DIR$/iotest.iml" filepath="$PROJECT_DIR$/iotest.iml" />
</modules>
</component>
</project>
\ No newline at end of file
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<?xml version="1.0" encoding="UTF-8"?>
<module org.jetbrains.idea.maven.project.MavenProjectsManager.isMavenModule="true" type="JAVA_MODULE" version="4">
<component name="NewModuleRootManager" LANGUAGE_LEVEL="JDK_1_8">
<output url="file://$MODULE_DIR$/target/classes" />
<output-test url="file://$MODULE_DIR$/target/test-classes" />
<content url="file://$MODULE_DIR$">
<sourceFolder url="file://$MODULE_DIR$/src/main/java" isTestSource="false" />
<sourceFolder url="file://$MODULE_DIR$/src/main/resources" type="java-resource" />
<sourceFolder url="file://$MODULE_DIR$/src/test/java" isTestSource="true" />
<excludeFolder url="file://$MODULE_DIR$/target" />
</content>
<orderEntry type="inheritedJdk" />
<orderEntry type="sourceFolder" forTests="false" />
<orderEntry type="library" name="Maven: log4j:log4j:1.2.17" level="project" />
<orderEntry type="library" name="Maven: org.slf4j:slf4j-api:1.7.25" level="project" />
<orderEntry type="library" name="Maven: edu.unc.genomics.io:genomics-io:1.0" level="project" />
</component>
</module>
\ No newline at end of file
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>iotest</groupId>
<artifactId>iotest</artifactId>
<version>1.0-SNAPSHOT</version>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<configuration>
<source>1.8</source>
<target>1.8</target>
</configuration>
</plugin>
</plugins>
</build>
<dependencies>
<dependency>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
<version>1.2.17</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>1.7.25</version>
</dependency>
<dependency>
<groupId>edu.unc.genomics.io</groupId>
<artifactId>genomics-io</artifactId>
<version>1.0</version>
</dependency>
</dependencies>
</project>
\ No newline at end of file
// Copyright (C) 2018 Michael Menzel
//
// This file is part of Enhort. <https://enhort.mni.thm.de>.
//
// Enhort is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// (at your option) any later version.
//
// Enhort is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License
// along with Enhort. If not, see <https://www.gnu.org/licenses/>.
import edu.unc.genomics.io.BedFileReader;
import org.apache.log4j.Logger;
import java.io.File;
import java.io.IOException;
import java.nio.file.Path;
public class Read {
public static void main(String[] args) {
final Logger log = Logger.getLogger(Read.class);
Read read = new Read();
read.read();
}
void read(){
try {
Path path = new File("/home/menzel/Desktop/THM/lfba/enhort/skripte/exons.bed").toPath();
BedFileReader bfr = new BedFileReader(path);
bfr.forEach(System.out::println);
} catch (IOException e) {
e.printStackTrace();
}
}
}
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