Commit d0d4df51 authored by Michael Menzel's avatar Michael Menzel

SETUP

parent 42e2e933
......@@ -7,12 +7,15 @@ For full usage it is recommended to have server with about 32 GB Mem for the cur
Enhort is build to run on two different servers, a computation back-end server and a visibile front-end server. However, it is possible to run both on the same server. Use 127.0.0.1 as ip then.
If you need a reference there is a read-to-use VirtualBox image with Enhort already set up available here:
https://homepages.thm.de/~mmnz21/enhort_vm_jan_2019.tar.gz
# Database
### Use pre-build database
Download the minimal SQlite database and the corresponding .bed-tracks from
https://homepages.thm.de/~mmnz21/minimal.db
https://homepages.thm.de/~mmnz21/enhort_bed_files_hg19.tar.gz %add hg19 folder
https://homepages.thm.de/~mmnz21/minimal.db
https://homepages.thm.de/~mmnz21/enhort_bed_files_hg19.tar.gz %add hg19 folder
Save the database and unpack .bed-files in a known directory.
......@@ -20,7 +23,8 @@ Save the database and unpack .bed-files in a known directory.
TODO
# Server setup
Download the enhort.jar from https://homepages.thm.de/~mmnz21/enhort.jar
Download the enhort.jar from
https://homepages.thm.de/~mmnz21/enhort.jar
Create a empty directory /logs in user home directory for logfiles
......@@ -38,7 +42,7 @@ The server is run with the following command:
# Frontend setup
Download the frontend archive containing the .jar and the contig sizes for hg19 and hg38 from
https://homepages.thm.de/~mmnz21/frontend.tar.gz
https://homepages.thm.de/~mmnz21/frontend.tar.gz
Create a empty directory /logs in user home directory for logfiles
The frontend is run with the following command:
......@@ -51,10 +55,16 @@ The frontend is run with the following command:
- A usage statistics file is written at the given location of the statistics file
# Bed test file
You can get a custom build test file containing some integration sites for hg19 here:
https://homepages.thm.de/~mmnz21/test.bed
# Misc
### Encryption
### Encryption on your own server
TODO
......
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