Commit c9eb8383 authored by Michael Menzel's avatar Michael Menzel

Readme contact for vm

parent e72444b1
......@@ -51,5 +51,5 @@ Build steps:
# VM
There is a VirtualBox image with Enhort set up for reference and to test with your own data:
(Please contact me to get the VM, it is not ready for distribution, yet)
(Please contact me to get a link to the VM)
// Copyright (C) 2018 Michael Menzel
//
// This file is part of Enhort. <https://enhort.mni.thm.de>.
//
// Enhort is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// (at your option) any later version.
//
// Enhort is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License
// along with Enhort. If not, see <https://www.gnu.org/licenses/>.
package de.thm.run;
@Deprecated
public class Testruns {
public static void main(String[] args) {
//Sites userDat = new UserData(new File("/home/menzel/Desktop/THM/lfba/projektphase/MLV.bed").toPath());
//Sites userDat = new UserData(new File("/home/menzel/Desktop/THM/lfba/projekphase/genomic_sites.sleeping_beauty.hg19.txt"));
//Sites userDat = new UserData(new File("/home/menzel/Downloads/sites_andreas/copy.tab").toPath());
/*
Sites userDat = BackgroundModelFactory.createBackgroundModel(7489);
logger.info(userDat.getPositionCount());
Intersect intersect = new Intersect();
TrackFactory.getInstance().loadIntervals();
InOutTrack track = null;
for(Track t: TrackFactory.getInstance().getAllIntervals()){
if(t.getName().equals("Exons")){
track = (InOutTrack) t;
}
}
logger.info((Arrays.toString(intersect.getAverageDistance(track, userDat).toArray())));
Analyse analyse = new Analyse();
try {
analyse.timing_intersect();
} catch (Exception e) {
logger.error("Exception {}", e.getMessage(), e);
}
*/
}
}
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