Commit 84624761 authored by Michael Menzel's avatar Michael Menzel

filter repeats from basic run

parent 5da7a8a4
......@@ -173,6 +173,7 @@ class AnalysisHelper {
if (cmd.getTracks().isEmpty()) { // when using /sample on frontend
try {
runTracks = trackFactory.getTracksByCellline("Unknown", cmd.getAssembly());
runTracks = runTracks.stream().filter(t -> !t.getName().contains("Repeat")).collect(Collectors.toList());
//runTracks.addAll(trackFactory.getTracksByCellline("", cmd.getAssembly())); // TODO get some cell line specific tracks for sample run
} catch (RuntimeException e) {
logger.warn("Error getting tracks {}", e);
......
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