From c9eb8383d170a90051eb1b6882a304cee6509663 Mon Sep 17 00:00:00 2001
From: Michael Menzel <michael.menzel@mni.thm.de>
Date: Mon, 4 Mar 2019 16:18:59 +0100
Subject: [PATCH] Readme contact for vm

---
 README                                        |  2 +-
 .../src/main/java/de/thm/run/Testruns.java    | 61 -------------------
 2 files changed, 1 insertion(+), 62 deletions(-)
 delete mode 100644 backend/src/main/java/de/thm/run/Testruns.java

diff --git a/README b/README
index 41b0bf77..5b740416 100644
--- a/README
+++ b/README
@@ -51,5 +51,5 @@ Build steps:
 # VM
 
 There is a VirtualBox image with Enhort set up for reference and to test with your own data:
-    (Please contact me to get the VM, it is not ready for distribution, yet)
+    (Please contact me to get a link to the VM)
 
diff --git a/backend/src/main/java/de/thm/run/Testruns.java b/backend/src/main/java/de/thm/run/Testruns.java
deleted file mode 100644
index 19663861..00000000
--- a/backend/src/main/java/de/thm/run/Testruns.java
+++ /dev/null
@@ -1,61 +0,0 @@
-// Copyright (C) 2018 Michael Menzel
-// 
-// This file is part of Enhort. <https://enhort.mni.thm.de>.
-// 
-// Enhort is free software: you can redistribute it and/or modify
-// it under the terms of the GNU General Public License as published by
-// the Free Software Foundation, either version 3 of the License, or
-// (at your option) any later version.
-// 
-// Enhort is distributed in the hope that it will be useful,
-// but WITHOUT ANY WARRANTY; without even the implied warranty of
-// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-// GNU General Public License for more details.
-// 
-// You should have received a copy of the GNU General Public License
-// along with Enhort.  If not, see <https://www.gnu.org/licenses/>.  
-package de.thm.run;
-
-@Deprecated
-public class Testruns {
-
-    public static void main(String[] args) {
-
-
-
-
-
-
-        //Sites userDat = new UserData(new File("/home/menzel/Desktop/THM/lfba/projektphase/MLV.bed").toPath());
-        //Sites userDat = new UserData(new File("/home/menzel/Desktop/THM/lfba/projekphase/genomic_sites.sleeping_beauty.hg19.txt"));
-        //Sites userDat = new UserData(new File("/home/menzel/Downloads/sites_andreas/copy.tab").toPath());
-
-        /*
-        Sites userDat = BackgroundModelFactory.createBackgroundModel(7489);
-
-        logger.info(userDat.getPositionCount());
-
-
-        Intersect intersect = new Intersect();
-        TrackFactory.getInstance().loadIntervals();
-
-        InOutTrack track = null;
-        for(Track t: TrackFactory.getInstance().getAllIntervals()){
-
-            if(t.getName().equals("Exons")){
-                track = (InOutTrack) t;
-            }
-        }
-
-        logger.info((Arrays.toString(intersect.getAverageDistance(track, userDat).toArray())));
-
-        Analyse analyse = new Analyse();
-        try {
-            analyse.timing_intersect();
-        } catch (Exception e) {
-            logger.error("Exception {}", e.getMessage(), e);
-        }
-        */
-
-    }
-}
-- 
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