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Enhort
Commit 52e44513 authored by Michael Menzel's avatar Michael Menzel
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before licence

parent 093cf9c9
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.gitignore
View file @ 52e44513
......@@ -7,6 +7,8 @@
*.json
*.csv
pw
# Package Files #
*.jar
*.war
......
backend/.idea/dataSources.local.xml
View file @ 52e44513
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="dataSourceStorageLocal">
<data-source name="trackdb" uuid="9e3e37a4-47e0-4279-9831-f5168f8ba7b3">
<database-info product="SQLite" version="3.16.1" jdbc-version="2.1" driver-name="SQLiteJDBC" driver-version="native" />
<data-source name="stefan.db" uuid="f7ee9b1c-4916-4df0-a4e4-db6f437edbf4">
<database-info product="SQLite" version="3.16.1" jdbc-version="2.1" driver-name="SQLiteJDBC" driver-version="native" family="SQLITE" exact-version="3.16.1" />
<case-sensitivity plain-identifiers="mixed" quoted-identifiers="mixed" />
<secret-storage>master_key</secret-storage>
<auth-required>false</auth-required>
<introspection-schemas>*:main</introspection-schemas>
</data-source>
<data-source name="enhort.db" uuid="61e34aef-106e-46b9-bb0e-ce8a1b0b1cc4">
<database-info product="SQLite" version="3.16.1" jdbc-version="2.1" driver-name="SQLiteJDBC" driver-version="native" />
<data-source name="track.db" uuid="540dbbc7-0e89-4b31-88b6-3a4737d22362">
<database-info product="SQLite" version="3.16.1" jdbc-version="2.1" driver-name="SQLiteJDBC" driver-version="native" family="SQLITE" exact-version="3.16.1" />
<case-sensitivity plain-identifiers="mixed" quoted-identifiers="mixed" />
<secret-storage>master_key</secret-storage>
<auth-required>false</auth-required>
<introspection-schemas>*:main</introspection-schemas>
</data-source>
<data-source name="stefan.db" uuid="587636b7-3f89-4014-93e4-7be9e7f15363">
<database-info product="SQLite" version="3.16.1" jdbc-version="2.1" driver-name="SQLiteJDBC" driver-version="native" />
<case-sensitivity plain-identifiers="mixed" quoted-identifiers="mixed" />
<secret-storage>master_key</secret-storage>
<auth-required>false</auth-required>
<introspection-schemas>*:main</introspection-schemas>
<introspection-schemas>*:*</introspection-schemas>
</data-source>
</component>
</project>
\ No newline at end of file
backend/.idea/dataSources.xml
View file @ 52e44513
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="DataSourceManagerImpl" format="xml" multifile-model="true">
<data-source source="LOCAL" name="trackdb" uuid="9e3e37a4-47e0-4279-9831-f5168f8ba7b3">
<data-source source="LOCAL" name="stefan.db" uuid="f7ee9b1c-4916-4df0-a4e4-db6f437edbf4">
<driver-ref>sqlite.xerial</driver-ref>
<synchronize>true</synchronize>
<jdbc-driver>org.sqlite.JDBC</jdbc-driver>
<jdbc-url>jdbc:sqlite:$PROJECT_DIR$/../../track.db</jdbc-url>
<driver-properties>
<property name="enable_load_extension" value="true" />
</driver-properties>
</data-source>
<data-source source="LOCAL" name="enhort.db" uuid="61e34aef-106e-46b9-bb0e-ce8a1b0b1cc4">
<driver-ref>sqlite.xerial</driver-ref>
<synchronize>true</synchronize>
<jdbc-driver>org.sqlite.JDBC</jdbc-driver>
<jdbc-url>jdbc:sqlite:$PROJECT_DIR$/../../../../lfba/enhort/enhort.db</jdbc-url>
<jdbc-url>jdbc:sqlite:$PROJECT_DIR$/../../../../lfba/enhort/stefan.db</jdbc-url>
<driver-properties>
<property name="enable_load_extension" value="true" />
</driver-properties>
</data-source>
<data-source source="LOCAL" name="stefan.db" uuid="587636b7-3f89-4014-93e4-7be9e7f15363">
<data-source source="LOCAL" name="track.db" uuid="540dbbc7-0e89-4b31-88b6-3a4737d22362">
<driver-ref>sqlite.xerial</driver-ref>
<synchronize>true</synchronize>
<jdbc-driver>org.sqlite.JDBC</jdbc-driver>
<jdbc-url>jdbc:sqlite:$PROJECT_DIR$/../../../../lfba/enhort/stefan.db</jdbc-url>
<jdbc-url>jdbc:sqlite:$PROJECT_DIR$/../../track.db</jdbc-url>
<driver-properties>
<property name="enable_load_extension" value="true" />
</driver-properties>
......
backend/.idea/dataSources/587636b7-3f89-4014-93e4-7be9e7f15363.xml deleted 100644 → 0
View file @ 093cf9c9
<?xml version="1.0" encoding="UTF-8"?>
<dataSource name="stefan.db">
<database-model serializer="dbm" rdbms="SQLITE" format-version="4.7">
<root id="1"/>
<schema id="2" parent="1" name="main">
<Current>1</Current>
<Visible>1</Visible>
</schema>
<collation id="3" parent="1" name="BINARY"/>
<collation id="4" parent="1" name="NOCASE"/>
<collation id="5" parent="1" name="RTRIM"/>
<table id="6" parent="2" name="bed_formats"/>
<table id="7" parent="2" name="cell_lines"/>
<table id="8" parent="2" name="chr_sizes"/>
<table id="9" parent="2" name="project"/>
<table id="10" parent="2" name="sqlite_master">
<System>1</System>
</table>
<table id="11" parent="2" name="sqlite_sequence">
<System>1</System>
</table>
<table id="12" parent="2" name="tracks"/>
<column id="13" parent="6" name="id">
<Position>1</Position>
<DataType>INTEGER|0</DataType>
<SequenceIdentity>1</SequenceIdentity>
</column>
<column id="14" parent="6" name="bed_format">
<Position>2</Position>
<DataType>TEXT|0</DataType>
</column>
<key id="15" parent="6">
<ColNames>id</ColNames>
<Primary>1</Primary>
</key>
<column id="16" parent="7" name="id">
<Position>1</Position>
<DataType>INTEGER|0</DataType>
<SequenceIdentity>1</SequenceIdentity>
</column>
<column id="17" parent="7" name="cell_line">
<Position>2</Position>
<DataType>TEXT|0</DataType>
</column>
<key id="18" parent="7">
<ColNames>id</ColNames>
<Primary>1</Primary>
</key>
<column id="19" parent="8" name="assembly">
<Position>1</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="20" parent="8" name="chromosome_name">
<Position>2</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="21" parent="8" name="size">
<Position>3</Position>
<DataType>INTEGER|0</DataType>
<NotNull>1</NotNull>
</column>
<index id="22" parent="8" name="sqlite_autoindex_chr_sizes_1">
<NameSurrogate>1</NameSurrogate>
<ColNames>assembly
chromosome_name</ColNames>
<Unique>1</Unique>
</index>
<key id="23" parent="8">
<ColNames>assembly
chromosome_name</ColNames>
<Primary>1</Primary>
<UnderlyingIndexName>sqlite_autoindex_chr_sizes_1</UnderlyingIndexName>
</key>
<column id="24" parent="9" name="id">
<Position>1</Position>
<DataType>INTEGER|0</DataType>
<SequenceIdentity>1</SequenceIdentity>
</column>
<column id="25" parent="9" name="name">
<Position>2</Position>
<DataType>TEXT|0</DataType>
</column>
<key id="26" parent="9">
<ColNames>id</ColNames>
<Primary>1</Primary>
</key>
<column id="27" parent="10" name="type">
<Position>1</Position>
<DataType>text|0</DataType>
</column>
<column id="28" parent="10" name="name">
<Position>2</Position>
<DataType>text|0</DataType>
</column>
<column id="29" parent="10" name="tbl_name">
<Position>3</Position>
<DataType>text|0</DataType>
</column>
<column id="30" parent="10" name="rootpage">
<Position>4</Position>
<DataType>integer|0</DataType>
</column>
<column id="31" parent="10" name="sql">
<Position>5</Position>
<DataType>text|0</DataType>
</column>
<column id="32" parent="11" name="name">
<Position>1</Position>
</column>
<column id="33" parent="11" name="seq">
<Position>2</Position>
</column>
<column id="34" parent="12" name="id">
<Position>1</Position>
<DataType>INTEGER|0</DataType>
<SequenceIdentity>1</SequenceIdentity>
</column>
<column id="35" parent="12" name="deep_blue_id">
<Position>2</Position>
<DataType>INTEGER|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="36" parent="12" name="name">
<Position>3</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="37" parent="12" name="description">
<Position>4</Position>
<DataType>TEXT|0</DataType>
</column>
<column id="38" parent="12" name="bed_format">
<Position>5</Position>
<DataType>INTEGER|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="39" parent="12" name="strandness">
<Position>6</Position>
<DataType>INTEGER|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="40" parent="12" name="genome_assembly">
<Position>7</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="41" parent="12" name="cell_line">
<Position>8</Position>
<DataType>INTEGER|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="42" parent="12" name="url">
<Position>9</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="43" parent="12" name="directory">
<Position>10</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="44" parent="12" name="original_filename">
<Position>11</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="45" parent="12" name="bed_filename">
<Position>12</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="46" parent="12" name="project">
<Position>13</Position>
<DataType>INTEGER|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="47" parent="12" name="lines">
<Position>14</Position>
<DataType>INTEGER|0</DataType>
</column>
<column id="48" parent="12" name="sample_info">
<Position>15</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="49" parent="12" name="extra_metadata">
<Position>16</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<index id="50" parent="12" name="sqlite_autoindex_tracks_1">
<NameSurrogate>1</NameSurrogate>
<ColNames>deep_blue_id</ColNames>
<Unique>1</Unique>
</index>
<index id="51" parent="12" name="tracks_index">
<ColNames>id</ColNames>
</index>
<key id="52" parent="12">
<ColNames>id</ColNames>
<Primary>1</Primary>
<UnderlyingIndexName>tracks_index</UnderlyingIndexName>
</key>
<key id="53" parent="12">
<ColNames>deep_blue_id</ColNames>
<UnderlyingIndexName>sqlite_autoindex_tracks_1</UnderlyingIndexName>
</key>
<foreign-key id="54" parent="12">
<ColNames>bed_format</ColNames>
<RefTableName>bed_formats</RefTableName>
<RefColNames>id</RefColNames>
</foreign-key>
<foreign-key id="55" parent="12">
<ColNames>cell_line</ColNames>
<RefTableName>cell_lines</RefTableName>
<RefColNames>id</RefColNames>
</foreign-key>
<foreign-key id="56" parent="12">
<ColNames>project</ColNames>
<RefTableName>project</RefTableName>
<RefColNames>id</RefColNames>
</foreign-key>
</database-model>
</dataSource>
\ No newline at end of file
backend/.idea/dataSources/61e34aef-106e-46b9-bb0e-ce8a1b0b1cc4.xml deleted 100644 → 0
View file @ 093cf9c9
<?xml version="1.0" encoding="UTF-8"?>
<dataSource name="enhort.db">
<database-model serializer="dbm" rdbms="SQLITE" format-version="4.7">
<root id="1"/>
<schema id="2" parent="1" name="main">
<Current>1</Current>
<Visible>1</Visible>
</schema>
<collation id="3" parent="1" name="BINARY"/>
<collation id="4" parent="1" name="NOCASE"/>
<collation id="5" parent="1" name="RTRIM"/>
<table id="6" parent="2" name="bed_formats"/>
<table id="7" parent="2" name="cell_lines"/>
<table id="8" parent="2" name="chr_sizes"/>
<table id="9" parent="2" name="project"/>
<table id="10" parent="2" name="sqlite_master">
<System>1</System>
</table>
<table id="11" parent="2" name="sqlite_sequence">
<System>1</System>
</table>
<table id="12" parent="2" name="tracks"/>
<column id="13" parent="6" name="id">
<Position>1</Position>
<DataType>INTEGER|0</DataType>
<SequenceIdentity>1</SequenceIdentity>
</column>
<column id="14" parent="6" name="bed_format">
<Position>2</Position>
<DataType>TEXT|0</DataType>
</column>
<key id="15" parent="6">
<ColNames>id</ColNames>
<Primary>1</Primary>
</key>
<column id="16" parent="7" name="id">
<Position>1</Position>
<DataType>INTEGER|0</DataType>
<SequenceIdentity>1</SequenceIdentity>
</column>
<column id="17" parent="7" name="cell_line">
<Position>2</Position>
<DataType>TEXT|0</DataType>
</column>
<key id="18" parent="7">
<ColNames>id</ColNames>
<Primary>1</Primary>
</key>
<column id="19" parent="8" name="assembly">
<Position>1</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="20" parent="8" name="chromosome_name">
<Position>2</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="21" parent="8" name="size">
<Position>3</Position>
<DataType>INTEGER|0</DataType>
<NotNull>1</NotNull>
</column>
<index id="22" parent="8" name="sqlite_autoindex_chr_sizes_1">
<NameSurrogate>1</NameSurrogate>
<ColNames>assembly
chromosome_name</ColNames>
<Unique>1</Unique>
</index>
<key id="23" parent="8">
<ColNames>assembly
chromosome_name</ColNames>
<Primary>1</Primary>
<UnderlyingIndexName>sqlite_autoindex_chr_sizes_1</UnderlyingIndexName>
</key>
<column id="24" parent="9" name="id">
<Position>1</Position>
<DataType>INTEGER|0</DataType>
<SequenceIdentity>1</SequenceIdentity>
</column>
<column id="25" parent="9" name="name">
<Position>2</Position>
<DataType>TEXT|0</DataType>
</column>
<key id="26" parent="9">
<ColNames>id</ColNames>
<Primary>1</Primary>
</key>
<column id="27" parent="10" name="type">
<Position>1</Position>
<DataType>text|0</DataType>
</column>
<column id="28" parent="10" name="name">
<Position>2</Position>
<DataType>text|0</DataType>
</column>
<column id="29" parent="10" name="tbl_name">
<Position>3</Position>
<DataType>text|0</DataType>
</column>
<column id="30" parent="10" name="rootpage">
<Position>4</Position>
<DataType>integer|0</DataType>
</column>
<column id="31" parent="10" name="sql">
<Position>5</Position>
<DataType>text|0</DataType>
</column>
<column id="32" parent="11" name="name">
<Position>1</Position>
</column>
<column id="33" parent="11" name="seq">
<Position>2</Position>
</column>
<column id="34" parent="12" name="id">
<Position>1</Position>
<DataType>INTEGER|0</DataType>
<SequenceIdentity>1</SequenceIdentity>
</column>
<column id="35" parent="12" name="deep_blue_id">
<Position>2</Position>
<DataType>INTEGER|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="36" parent="12" name="name">
<Position>3</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="37" parent="12" name="description">
<Position>4</Position>
<DataType>TEXT|0</DataType>
</column>
<column id="38" parent="12" name="bed_format">
<Position>5</Position>
<DataType>INTEGER|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="39" parent="12" name="strandness">
<Position>6</Position>
<DataType>INTEGER|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="40" parent="12" name="genome_assembly">
<Position>7</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="41" parent="12" name="cell_line">
<Position>8</Position>
<DataType>INTEGER|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="42" parent="12" name="url">
<Position>9</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="43" parent="12" name="directory">
<Position>10</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="44" parent="12" name="original_filename">
<Position>11</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="45" parent="12" name="bed_filename">
<Position>12</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="46" parent="12" name="project">
<Position>13</Position>
<DataType>INTEGER|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="47" parent="12" name="lines">
<Position>14</Position>
<DataType>INTEGER|0</DataType>
</column>
<column id="48" parent="12" name="sample_info">
<Position>15</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="49" parent="12" name="extra_metadata">
<Position>16</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<index id="50" parent="12" name="sqlite_autoindex_tracks_1">
<NameSurrogate>1</NameSurrogate>
<ColNames>deep_blue_id</ColNames>
<Unique>1</Unique>
</index>
<index id="51" parent="12" name="tracks_index">
<ColNames>id</ColNames>
</index>
<key id="52" parent="12">
<ColNames>id</ColNames>
<Primary>1</Primary>
<UnderlyingIndexName>tracks_index</UnderlyingIndexName>
</key>
<key id="53" parent="12">
<ColNames>deep_blue_id</ColNames>
<UnderlyingIndexName>sqlite_autoindex_tracks_1</UnderlyingIndexName>
</key>
<foreign-key id="54" parent="12">
<ColNames>bed_format</ColNames>
<RefTableName>bed_formats</RefTableName>
<RefColNames>id</RefColNames>
</foreign-key>
<foreign-key id="55" parent="12">
<ColNames>cell_line</ColNames>
<RefTableName>cell_lines</RefTableName>
<RefColNames>id</RefColNames>
</foreign-key>
<foreign-key id="56" parent="12">
<ColNames>project</ColNames>
<RefTableName>project</RefTableName>
<RefColNames>id</RefColNames>
</foreign-key>
</database-model>
</dataSource>
\ No newline at end of file
backend/.idea/dataSources/9e3e37a4-47e0-4279-9831-f5168f8ba7b3.xml deleted 100644 → 0
View file @ 093cf9c9
<?xml version="1.0" encoding="UTF-8"?>
<dataSource name="trackdb">
<database-model serializer="dbm" rdbms="SQLITE" format-version="4.7">
<root id="1"/>
<schema id="2" parent="1" name="main">
<Current>1</Current>
<Visible>1</Visible>
</schema>
<collation id="3" parent="1" name="BINARY"/>
<collation id="4" parent="1" name="NOCASE"/>
<collation id="5" parent="1" name="RTRIM"/>
<table id="6" parent="2" name="celllines"/>
<table id="7" parent="2" name="chrSizes"/>
<table id="8" parent="2" name="compilations"/>
<table id="9" parent="2" name="sqlite_master">
<System>1</System>
</table>
<table id="10" parent="2" name="sqlite_sequence">
<System>1</System>
</table>
<table id="11" parent="2" name="tracks"/>
<view id="12" parent="2" name="compilationsView"/>
<column id="13" parent="6" name="name">
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="14" parent="6" name="parent">
<Position>1</Position>
<DataType>TEXT|0</DataType>
</column>
<index id="15" parent="6" name="sqlite_autoindex_celllines_1">
<NameSurrogate>1</NameSurrogate>
<ColNames>name</ColNames>
<Unique>1</Unique>
</index>
<key id="16" parent="6">
<ColNames>name</ColNames>
<Primary>1</Primary>
<UnderlyingIndexName>sqlite_autoindex_celllines_1</UnderlyingIndexName>
</key>
<column id="17" parent="7" name="assembly">
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="18" parent="7" name="chrNumber">
<Position>1</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="19" parent="7" name="size">
<Position>2</Position>
<DataType>INTEGER|0</DataType>
<NotNull>1</NotNull>
</column>
<index id="20" parent="7" name="sqlite_autoindex_chrSizes_1">
<NameSurrogate>1</NameSurrogate>
<ColNames>assembly
chrNumber</ColNames>
<Unique>1</Unique>
</index>
<key id="21" parent="7">
<ColNames>assembly
chrNumber</ColNames>
<Primary>1</Primary>
<UnderlyingIndexName>sqlite_autoindex_chrSizes_1</UnderlyingIndexName>
</key>
<column id="22" parent="8" name="trackID">
<DataType>INTEGER|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="23" parent="8" name="name">
<Position>1</Position>
<DataType>TEXT|0</DataType>
<NotNull>1</NotNull>
</column>
<column id="24" parent="9" name="type">
<DataType>text|0</DataType>
</column>