From 4f7e6429fc6ef847e56b73da9bdf88b9a64e1da7 Mon Sep 17 00:00:00 2001
From: Michael Menzel <michael.menzel@mni.thm.de>
Date: Mon, 30 Mar 2020 15:18:14 +0200
Subject: [PATCH] background model count set to max of min bg or position count

---
 backend/src/main/java/de/thm/run/AnalysisHelper.java | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/backend/src/main/java/de/thm/run/AnalysisHelper.java b/backend/src/main/java/de/thm/run/AnalysisHelper.java
index 20d30ef1..4668ed58 100644
--- a/backend/src/main/java/de/thm/run/AnalysisHelper.java
+++ b/backend/src/main/java/de/thm/run/AnalysisHelper.java
@@ -111,7 +111,7 @@ class AnalysisHelper {
                  SiteFactory factory = SiteFactoryFactory.getInstance().get(sites.getAssembly());
                  bg[0] = factory.getByLogo(LogoCreator.createLogo(sites), minSites);
              } else if (covariants.isEmpty()) {
-                 bg[0] = BackgroundModelFactory.createBackgroundModel(sites.getAssembly(), sites.getPositionCount()); //check if minSites is larger
+                 bg[0] = BackgroundModelFactory.createBackgroundModel(sites.getAssembly(), Math.max(sites.getPositionCount(), cmd.getMinBg()));
              } else {
                  try {
                      bg[0] = BackgroundModelFactory.createBackgroundModel(covariants, sites, minSites, smooth);
-- 
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