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Michael Menzel
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Commits
0ff53cb9
Commit
0ff53cb9
authored
Mar 30, 2020
by
Michael Menzel
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removed duplicate code
parent
af459171
Changes
1
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-6
backend/src/main/java/de/thm/genomeData/tracks/FileLoader.java
...nd/src/main/java/de/thm/genomeData/tracks/FileLoader.java
+0
-6
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backend/src/main/java/de/thm/genomeData/tracks/FileLoader.java
View file @
0ff53cb9
...
@@ -234,12 +234,6 @@ class FileLoader implements Callable<Optional<Track>> {
...
@@ -234,12 +234,6 @@ class FileLoader implements Callable<Optional<Track>> {
logger
.
warn
(
"Looks like this track is not sorted "
+
file
.
getName
()
+
"("
+
file
.
getAbsolutePath
()
+
")"
+
pos
.
getLeft
()
+
" "
+
pos
.
getRight
());
logger
.
warn
(
"Looks like this track is not sorted "
+
file
.
getName
()
+
"("
+
file
.
getAbsolutePath
()
+
")"
+
pos
.
getLeft
()
+
" "
+
pos
.
getRight
());
}
}
for
(
int
i
=
0
;
i
<
starts
.
size
()
-
1
;
i
++)
if
(
ends
.
get
(
i
)
>
ends
.
get
(
i
+
1
))
{
Pair
<
String
,
Long
>
pos
=
chrSizes
.
mapToChr
(
assembly
,
ends
.
get
(
i
));
logger
.
warn
(
"Looks like this track is not sorted "
+
file
.
getName
()
+
"("
+
file
.
getAbsolutePath
()
+
")"
+
pos
.
getLeft
()
+
" "
+
pos
.
getRight
());
}
for
(
int
i
=
0
;
i
<
starts
.
size
();
i
++)
for
(
int
i
=
0
;
i
<
starts
.
size
();
i
++)
if
(
starts
.
get
(
i
)
>
ends
.
get
(
i
))
if
(
starts
.
get
(
i
)
>
ends
.
get
(
i
))
logger
.
warn
(
"There is an interval with larger end than start in "
+
file
.
getName
()
+
"("
+
file
.
getAbsolutePath
()
+
")"
);
logger
.
warn
(
"There is an interval with larger end than start in "
+
file
.
getName
()
+
"("
+
file
.
getAbsolutePath
()
+
")"
);
...
...
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